My Open-Source Software

The following open-source bioinformatics tools that I have developed are available for download:

ERROR CORRECTION TOOL
  • HECTOR
    • a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data.

TANDEM REPEAT FINDER
  • INVERTER
    • a de novo tandem repeat finder without the need to specify either the pattern or a particular pattern size, integrated with a data visualization tool and has a built-in user-friendly GUI.

SEQUENCE ALIGNMENT
  • CUDASW++ 3.0
    • a fast parallel Smith-Waterman protein database search¬†using CUDA for GPGPU architecture
  • CBESW
    • a fast parallel Smith Waterman protein database search algorithm on the PlayStation 3
  • DistMatComp
    • a multi-threaded vectorized distance matrix computation on the¬†Cell Broadband Engine and x86/SSE2 architectures