My Publications

Book Chapters
  1. A. Wirawan, C.K. Kwoh, L.Y. Hsu, T.H. Koh: INVERTER: INtegrated Variable numbER Tandem rEpeat findeRCommunications in Computer and Information Science, Volume 115, Part 4, pp. 151-164, Springer, 2010. DOI: 10.1007/978-3-642-16750-8_14. 
  2. A. Wirawan, B. Schmidt, C.K. Kwoh: Pairwise Distance Matrix Computation for Multiple Sequence Alignment on the Cell Broadband Engine,  Lecture Notes in Computer Science (LNCS), Vol. 5544, pp. 954-963, Springer, 2009. DOI: 10.1007/978-3-540-68111-3_132 
  3. A. Wirawan, B. Schmidt, C.K. Kwoh: Parallel DNA Sequence Alignment on the Cell Broadband EngineLecture Notes in Computer Science (LNCS) Vol. 4967, pp. 1249-1256, Springer, 2008. DOI: 10.1007/978-3-642-01970-8_96

Journals
  1. A. Wirawan, R.S. Harris, Y.Liu, B. Schmidt, J. Schröder: HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing dataBMC Bioinformatics, 15:131, 2014.
  2. Y. Liu, A. Wirawan and B. Schmidt: CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructionsBMC Bioinformatics, 14(117), 2013. Highly accessed 
  3. K.G. Lim, C.K. Kwoh, L.Y. Hsu, A. WirawanReview of Tandem Repeat Search Tools: A Systematic Approach to Evaluating Algorithmic PerformanceBriefings in Bioinformatics, 14 (1): 67-81, 2013. (Impact factor: 5.202)
  4. A. Wirawan, C. K. Kwoh, P. T. K. Chew, M. C. D. Aquino, S. C. Loon, J. See, C. Zheng, W. Lin: Feature Selection for Computer-Aided Angle Closure Glaucoma Mechanism DetectionJ. Med. Imaging Health Inf. Vol 2, No. 4, pp. 438-444, 2012
  5. A. Wirawan, C.K. Kwoh, B. Schmidt: Multi Threaded Vectorized Distance Matrix Computation on the Cell/BE and x86/SSE2 ArchitecturesBioinformatics, Vol. 26, No. 10, pp. 1368-1369, 2010 (Impact factor: 5.468) 
  6. A. Wirawan, B. Schmidt, H. Zhang, C.K. Kwoh: High Performance Protein Sequence Database Scanning on the Cell B.E. ProcessorScientific Programming, Vol. 17, No. 1-2, pp. 97-111, 2009. 
  7. A. Wirawan, C.K. Kwoh, T.H. Nim, B. Schmidt: CBESW: Sequence Alignment on the Playstation 3BMC Bioinformatics, Vol. 9:377, 2008 (Impact factor: 3.781). Highly accessed 

International Conferences

  1. Z. Zhang, C.K. Kwoh, J. Liu, F. Yin, A. Wirawan, C. Cheung, M. Baskaran, T. Aung, T. Y. Wong: MRMR Optimized Classification for Automatic Glaucoma Diagnosis. 33rd Annual International IEEE EMBS Conference (EMBC 2011), Boston, MA, USA, 2011. Accepted for publication.
  2. N.T. Hieu, C.K. Kwoh. A. Wirawan, B. Schmidt: Applications of Heterogeneous Structure of Cell Broadband Engine Architecture for Biological Database Similarity Search, 2nd International Conference on Bioinformatics and Biomedical Engineering (iCBBE2008), IEEE Press, pp. 5-8, 2008.
  3. A. Wirawan, B. Schmidt: Parallel Discovery of Transcription Factor Binding SitesIEEE Asia Pacific Conference on Circuits and Systems (APCCAS 2006), Singapore, IEEE Press, 2006.