My Publications

Book Chapters
  1. A. Wirawan, C.K. Kwoh, L.Y. Hsu, T.H. Koh: INVERTER: INtegrated Variable numbER Tandem rEpeat findeRCommunications in Computer and Information Science, Volume 115, Part 4, pp. 151-164, Springer, 2010. DOI: 10.1007/978-3-642-16750-8_14. 
  2. A. Wirawan, B. Schmidt, C.K. Kwoh: Pairwise Distance Matrix Computation for Multiple Sequence Alignment on the Cell Broadband Engine,  Lecture Notes in Computer Science (LNCS), Vol. 5544, pp. 954-963, Springer, 2009. DOI: 10.1007/978-3-540-68111-3_132 
  3. A. Wirawan, B. Schmidt, C.K. Kwoh: Parallel DNA Sequence Alignment on the Cell Broadband EngineLecture Notes in Computer Science (LNCS) Vol. 4967, pp. 1249-1256, Springer, 2008. DOI: 10.1007/978-3-642-01970-8_96

Journals
  1. J. Schroeder, A. Wirawan, B. Schmidt, A. T. Papenfuss: CLOVE: classification of genomic fusions into structural variation events. BMC Bioinformatics, 18:346, 2017.
  2. A. Wirawan, R.S. Harris, Y.Liu, B. Schmidt, J. Schröder: HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing dataBMC Bioinformatics, 15:131, 2014.
  3. Y. Liu, A. Wirawan and B. Schmidt: CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructionsBMC Bioinformatics, 14(117), 2013. Highly accessed 
  4. K.G. Lim, C.K. Kwoh, L.Y. Hsu, A. WirawanReview of Tandem Repeat Search Tools: A Systematic Approach to Evaluating Algorithmic PerformanceBriefings in Bioinformatics, 14 (1): 67-81, 2013. 
  5. A. Wirawan, C. K. Kwoh, P. T. K. Chew, M. C. D. Aquino, S. C. Loon, J. See, C. Zheng, W. Lin: Feature Selection for Computer-Aided Angle Closure Glaucoma Mechanism DetectionJ. Med. Imaging Health Inf. Vol 2, No. 4, pp. 438-444, 2012
  6. A. Wirawan, C.K. Kwoh, B. Schmidt: Multi Threaded Vectorized Distance Matrix Computation on the Cell/BE and x86/SSE2 ArchitecturesBioinformatics, Vol. 26, No. 10, pp. 1368-1369, 2010.
  7. A. Wirawan, B. Schmidt, H. Zhang, C.K. Kwoh: High Performance Protein Sequence Database Scanning on the Cell B.E. ProcessorScientific Programming, Vol. 17, No. 1-2, pp. 97-111, 2009. 
  8. A. Wirawan, C.K. Kwoh, T.H. Nim, B. Schmidt: CBESW: Sequence Alignment on the Playstation 3BMC Bioinformatics, Vol. 9:377, 2008. Highly accessed 

International Conferences

  1. Z. Zhang, C.K. Kwoh, J. Liu, F. Yin, A. Wirawan, C. Cheung, M. Baskaran, T. Aung, T. Y. Wong: MRMR Optimized Classification for Automatic Glaucoma Diagnosis. 33rd Annual International IEEE EMBS Conference (EMBC 2011), Boston, MA, USA, 2011. 
  2. N.T. Hieu, C.K. Kwoh. A. Wirawan, B. Schmidt: Applications of Heterogeneous Structure of Cell Broadband Engine Architecture for Biological Database Similarity Search, 2nd International Conference on Bioinformatics and Biomedical Engineering (iCBBE2008), IEEE Press, pp. 5-8, 2008.
  3. A. Wirawan, B. Schmidt: Parallel Discovery of Transcription Factor Binding SitesIEEE Asia Pacific Conference on Circuits and Systems (APCCAS 2006), Singapore, IEEE Press, 2006.